pertpy.data.schiebinger_2019_18day

pertpy.data.schiebinger_2019_18day()[source]

Transcriptomes of 259155 iPSC cells collected over 39 time points in 2i or serum conditions (18-day time course).

Samples were collected from established iPSC lines reprogrammed from the reprogramming mouse embryonic fibroblasts (MEFs), maintained in either 2i or serum conditions, over 39 time points separated by ∼12 hours across an 18-day time course (and every 6 hours between days 8 and 9). Overall, 259,155 cells were profiled.

References

Publication: https://doi.org/10.1016/j.cell.2019.01.006 Obtained from scperturb: http://projects.sanderlab.org/scperturb/

Return type:

AnnData

Returns:

AnnData object of scPerturb single-cell perturbation data