pertpy

pertpy is part of the scverse® project (website, governance) and is fiscally sponsored by NumFOCUS. If you like scverse® and want to support our mission, please consider making a tax-deductible donation to help the project pay for developer time, professional services, travel, workshops, and a variety of other needs.

Installation

New to pertpy? Check out the installation guide.

Installation
API reference

The API reference contains a detailed description of the pertpy API.

Usage
Tutorials

The tutorials walk you through real-world applications of pertpy.

Tutorials
Discussion

Need help? Reach out on our forum to get your questions answered!

https://discourse.scverse.org/
GitHub

Find a bug? Interested in improving pertpy? Checkout our GitHub for the latest developments.

https://github.com/scverse/pertpy

Citation

Lukas Heumos, Yuge Ji, Lilly May, Tessa Green, Xinyue Zhang, Xichen Wu, Johannes Ostner, Stefan Peidli, Antonia Schumacher, Karin Hrovatin, Michaela Mueller, Faye Chong, Gregor Sturm, Alejandro Tejada, Emma Dann, Mingze Dong, Mojtaba Bahrami, Ilan Gold, Sergei Rybakov, Altana Namsaraeva, Amir Ali Moinfar, Zihe Zheng, Eljas Roellin, Isra Mekki, Chris Sander, Mohammad Lotfollahi, Herbert B. Schiller, Fabian J. Theis bioRxiv 2024.08.04.606516; doi: https://doi.org/10.1101/2024.08.04.606516

Consider citing scanpy Genome Biology (2018) along with the original references.

Indices and tables