pertpy.data.dong_2023

Contents

pertpy.data.dong_2023#

dong_2023()[source]#

Complete CINEMA-OT dataset.

Ex vivo stimulation of human peripheral blood mononuclear cells (PBMC) with interferon. This is the full dataset containing 9209 cells that were stimulated with IFNb, IFNg, IFNb+IFNg, or left unstimulated. A subsampled version of the dataset is available via cinemaot_example().

References

Preprint: https://doi.org/10.1101/2022.07.31.502173 Dataset available here: https://datadryad.org/stash/dataset/doi:10.5061/dryad.4xgxd25g1

Return type:

AnnData

Returns:

AnnData object of PBMCs stimulated with interferon.