pertpy.data.tasccoda_example#
- tasccoda_example()[source]#
Example for the coda part of a mudata object.
Resulting AnnData object (mudata[‘coda’]) when preparing a dataset for processing with tascCODA. Created using the smillie dataset, which comprises scRNA-seq data of the small intestine of mice under Ulcerative Colitis. The full dataset containing the actual count data can be obtained via smillie_2019().
References
Smillie, Christopher S et al. “Intra- and Inter-cellular Rewiring of the Human Colon during Ulcerative Colitis.” Cell vol. 178,3 (2019): 714-730.e22. doi:10.1016/j.cell.2019.06.029