pertpy.tools.Scgen
==================

.. currentmodule:: pertpy.tools

.. add toctree option to make autodoc generate the pages

.. autoclass:: Scgen



Attributes table
~~~~~~~~~~~~~~~~

.. autosummary::

    ~Scgen.adata
    ~Scgen.adata_manager
    ~Scgen.device
    ~Scgen.get_normalized_function_name
    ~Scgen.history
    ~Scgen.is_trained
    ~Scgen.registry
    ~Scgen.summary_string
    ~Scgen.test_indices
    ~Scgen.train_indices
    ~Scgen.validation_indices





Methods table
~~~~~~~~~~~~~

.. autosummary::

    ~Scgen.batch_removal
    ~Scgen.convert_legacy_save
    ~Scgen.data_registry
    ~Scgen.deregister_manager
    ~Scgen.get_anndata_manager
    ~Scgen.get_decoded_expression
    ~Scgen.get_from_registry
    ~Scgen.get_latent_representation
    ~Scgen.get_normalized_expression
    ~Scgen.get_setup_arg
    ~Scgen.get_state_registry
    ~Scgen.get_var_names
    ~Scgen.load
    ~Scgen.load_registry
    ~Scgen.plot_binary_classifier
    ~Scgen.plot_reg_mean_plot
    ~Scgen.plot_reg_var_plot
    ~Scgen.predict
    ~Scgen.register_manager
    ~Scgen.save
    ~Scgen.setup_anndata
    ~Scgen.to_device
    ~Scgen.train
    ~Scgen.transfer_fields
    ~Scgen.update_setup_method_args
    ~Scgen.view_anndata_setup
    ~Scgen.view_registry
    ~Scgen.view_setup_args
    ~Scgen.view_setup_method_args





Attributes
~~~~~~~~~~



.. autoattribute:: Scgen.adata

.. autoattribute:: Scgen.adata_manager

.. autoattribute:: Scgen.device

.. autoattribute:: Scgen.get_normalized_function_name

.. autoattribute:: Scgen.history

.. autoattribute:: Scgen.is_trained

.. autoattribute:: Scgen.registry

.. autoattribute:: Scgen.summary_string

.. autoattribute:: Scgen.test_indices

.. autoattribute:: Scgen.train_indices

.. autoattribute:: Scgen.validation_indices






Methods
~~~~~~~



.. automethod:: Scgen.batch_removal

.. automethod:: Scgen.convert_legacy_save

.. automethod:: Scgen.data_registry

.. automethod:: Scgen.deregister_manager

.. automethod:: Scgen.get_anndata_manager

.. automethod:: Scgen.get_decoded_expression

.. automethod:: Scgen.get_from_registry

.. automethod:: Scgen.get_latent_representation

.. automethod:: Scgen.get_normalized_expression

.. automethod:: Scgen.get_setup_arg

.. automethod:: Scgen.get_state_registry

.. automethod:: Scgen.get_var_names

.. automethod:: Scgen.load

.. automethod:: Scgen.load_registry

.. automethod:: Scgen.plot_binary_classifier

.. automethod:: Scgen.plot_reg_mean_plot

.. automethod:: Scgen.plot_reg_var_plot

.. automethod:: Scgen.predict

.. automethod:: Scgen.register_manager

.. automethod:: Scgen.save

.. automethod:: Scgen.setup_anndata

.. automethod:: Scgen.to_device

.. automethod:: Scgen.train

.. automethod:: Scgen.transfer_fields

.. automethod:: Scgen.update_setup_method_args

.. automethod:: Scgen.view_anndata_setup

.. automethod:: Scgen.view_registry

.. automethod:: Scgen.view_setup_args

.. automethod:: Scgen.view_setup_method_args