pertpy.tools.Sccoda
===================

.. currentmodule:: pertpy.tools

.. add toctree option to make autodoc generate the pages

.. autoclass:: Sccoda







Methods table
~~~~~~~~~~~~~

.. autosummary::

    ~Sccoda.credible_effects
    ~Sccoda.get_effect_df
    ~Sccoda.get_intercept_df
    ~Sccoda.get_node_df
    ~Sccoda.load
    ~Sccoda.make_arviz
    ~Sccoda.model
    ~Sccoda.plot_boxplots
    ~Sccoda.plot_draw_effects
    ~Sccoda.plot_draw_tree
    ~Sccoda.plot_effects_barplot
    ~Sccoda.plot_effects_umap
    ~Sccoda.plot_rel_abundance_dispersion_plot
    ~Sccoda.plot_stacked_barplot
    ~Sccoda.prepare
    ~Sccoda.run_hmc
    ~Sccoda.run_nuts
    ~Sccoda.set_fdr
    ~Sccoda.set_init_mcmc_states
    ~Sccoda.summary
    ~Sccoda.summary_prepare









Methods
~~~~~~~



.. automethod:: Sccoda.credible_effects

.. automethod:: Sccoda.get_effect_df

.. automethod:: Sccoda.get_intercept_df

.. automethod:: Sccoda.get_node_df

.. automethod:: Sccoda.load

.. automethod:: Sccoda.make_arviz

.. automethod:: Sccoda.model

.. automethod:: Sccoda.plot_boxplots

.. automethod:: Sccoda.plot_draw_effects

.. automethod:: Sccoda.plot_draw_tree

.. automethod:: Sccoda.plot_effects_barplot

.. automethod:: Sccoda.plot_effects_umap

.. automethod:: Sccoda.plot_rel_abundance_dispersion_plot

.. automethod:: Sccoda.plot_stacked_barplot

.. automethod:: Sccoda.prepare

.. automethod:: Sccoda.run_hmc

.. automethod:: Sccoda.run_nuts

.. automethod:: Sccoda.set_fdr

.. automethod:: Sccoda.set_init_mcmc_states

.. automethod:: Sccoda.summary

.. automethod:: Sccoda.summary_prepare