# Tools

## Differential gene expression

```{eval-rst}
.. nbgallery::

   notebooks/differential_gene_expression
```

## Pooled CRISPR screens

```{eval-rst}
.. nbgallery::

   notebooks/mixscape
```

## Compositional analysis

```{eval-rst}
.. nbgallery::

   notebooks/sccoda
   notebooks/sccoda_extended
   notebooks/tasccoda
   notebooks/milo
```

## Multicellular and gene programs

```{eval-rst}
.. nbgallery::

   notebooks/dialogue
   notebooks/enrichment
```

## Distances and permutation tests

```{eval-rst}
.. nbgallery::

   notebooks/distances
   notebooks/distance_tests
```

## Response prediction

```{eval-rst}
.. nbgallery::

   notebooks/augur
   notebooks/cinemaot
   notebooks/scgen_perturbation_prediction
```

## Perturbation space

```{eval-rst}
.. nbgallery::

   notebooks/perturbation_space
```