pertpy.tools.Tasccoda
=====================

.. currentmodule:: pertpy.tools

.. add toctree option to make autodoc generate the pages

.. autoclass:: Tasccoda







Methods table
~~~~~~~~~~~~~

.. autosummary::

    ~Tasccoda.credible_effects
    ~Tasccoda.get_effect_df
    ~Tasccoda.get_intercept_df
    ~Tasccoda.get_node_df
    ~Tasccoda.load
    ~Tasccoda.make_arviz
    ~Tasccoda.model
    ~Tasccoda.plot_boxplots
    ~Tasccoda.plot_draw_effects
    ~Tasccoda.plot_draw_tree
    ~Tasccoda.plot_effects_barplot
    ~Tasccoda.plot_effects_umap
    ~Tasccoda.plot_rel_abundance_dispersion_plot
    ~Tasccoda.plot_stacked_barplot
    ~Tasccoda.prepare
    ~Tasccoda.run_hmc
    ~Tasccoda.run_nuts
    ~Tasccoda.set_fdr
    ~Tasccoda.set_init_mcmc_states
    ~Tasccoda.summary
    ~Tasccoda.summary_prepare









Methods
~~~~~~~



.. automethod:: Tasccoda.credible_effects

.. automethod:: Tasccoda.get_effect_df

.. automethod:: Tasccoda.get_intercept_df

.. automethod:: Tasccoda.get_node_df

.. automethod:: Tasccoda.load

.. automethod:: Tasccoda.make_arviz

.. automethod:: Tasccoda.model

.. automethod:: Tasccoda.plot_boxplots

.. automethod:: Tasccoda.plot_draw_effects

.. automethod:: Tasccoda.plot_draw_tree

.. automethod:: Tasccoda.plot_effects_barplot

.. automethod:: Tasccoda.plot_effects_umap

.. automethod:: Tasccoda.plot_rel_abundance_dispersion_plot

.. automethod:: Tasccoda.plot_stacked_barplot

.. automethod:: Tasccoda.prepare

.. automethod:: Tasccoda.run_hmc

.. automethod:: Tasccoda.run_nuts

.. automethod:: Tasccoda.set_fdr

.. automethod:: Tasccoda.set_init_mcmc_states

.. automethod:: Tasccoda.summary

.. automethod:: Tasccoda.summary_prepare