pertpy.tools.PyDESeq2
=====================

.. currentmodule:: pertpy.tools

.. add toctree option to make autodoc generate the pages

.. autoclass:: PyDESeq2



Attributes table
~~~~~~~~~~~~~~~~

.. autosummary::

    ~PyDESeq2.data
    ~PyDESeq2.variables





Methods table
~~~~~~~~~~~~~

.. autosummary::

    ~PyDESeq2.compare_groups
    ~PyDESeq2.cond
    ~PyDESeq2.contrast
    ~PyDESeq2.fit
    ~PyDESeq2.plot_fold_change
    ~PyDESeq2.plot_multicomparison_fc
    ~PyDESeq2.plot_paired
    ~PyDESeq2.plot_volcano
    ~PyDESeq2.test_contrasts
    ~PyDESeq2.test_reduced





Attributes
~~~~~~~~~~



.. autoattribute:: PyDESeq2.data

.. autoattribute:: PyDESeq2.variables






Methods
~~~~~~~



.. automethod:: PyDESeq2.compare_groups

.. automethod:: PyDESeq2.cond

.. automethod:: PyDESeq2.contrast

.. automethod:: PyDESeq2.fit

.. automethod:: PyDESeq2.plot_fold_change

.. automethod:: PyDESeq2.plot_multicomparison_fc

.. automethod:: PyDESeq2.plot_paired

.. automethod:: PyDESeq2.plot_volcano

.. automethod:: PyDESeq2.test_contrasts

.. automethod:: PyDESeq2.test_reduced